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Review
. 2023 May;128(9):1625-1635.
doi: 10.1038/s41416-023-02191-4. Epub 2023 Feb 9.

An old friend with a new face: tRNA-derived small RNAs with big regulatory potential in cancer biology

Affiliations
Free PMC article
Review

An old friend with a new face: tRNA-derived small RNAs with big regulatory potential in cancer biology

Arianna Di Fazio et al. Br J Cancer. 2023 May.
Free PMC article

Abstract

Transfer RNAs (tRNAs) are small non-coding RNAs (sncRNAs) essential for protein translation. Emerging evidence suggests that tRNAs can also be processed into smaller fragments, tRNA-derived small RNAs (tsRNAs), a novel class of sncRNAs with powerful applications and high biological relevance to cancer. tsRNAs biogenesis is heterogeneous and involves different ribonucleases, such as Angiogenin and Dicer. For many years, tsRNAs were thought to be just degradation products. However, accumulating evidence shows their roles in gene expression: either directly via destabilising the mRNA or the ribosomal machinery, or indirectly via regulating the expression of ribosomal components. Furthermore, tsRNAs participate in various biological processes linked to cancer, including apoptosis, cell cycle, immune response, and retroviral insertion into the human genome. It is emerging that tsRNAs have significant therapeutic potential. Endogenous tsRNAs can be used as cancer biomarkers, while synthetic tsRNAs and antisense oligonucleotides can be employed to regulate gene expression. In this review, we are recapitulating the regulatory roles of tsRNAs, with a focus on cancer biology.

Conflict of interest statement

The authors declare no competing interests.

Figures

Fig. 1
Fig. 1. Summary of tsRNAs classification and features.
First column: tsRNAs are classified according to alignment to tRNA precursors. Type I tsRNAs are generated by cleavage of 5’ or 3’ mature tRNA ends; type II tsRNAs align with 3’ trailer sequence of pre-tRNAs. tRNA halves align to half of the mature tRNA molecules. Other tsRNA types are generated from 5’ leader sequence of pre-tRNAs or internal tRNA or pre-tRNA sequences. The second column summarises known ribonucleases involved in tsRNA biogenesis. Features of each tsRNA type including chemical modifications and length are highlighted in the third column. Finally, some general functions of tsRNA types related to cancer biology are reported in last column. Image was created with Biorender.com. tsRNA tRNA-derived small RNA, ANG Angiogenin, m1A N1-methyladenosine, RNase Z ribonuclease Z, ELAC2 ElaC ribonuclease Z 2, SHOT RNA sex hormone-dependent tRNA-derived RNAs, RNase P ribonuclease P.
Fig. 2
Fig. 2. Summary of relevant tsRNA-driven mechanisms of gene expression regulation.
tsRNAs mediate gene silencing. tsRNAs are loaded on Argonaute 2 (AGO2) and participate in post-transcriptional gene silencing (PTGS), and nascent RNA silencing (NRS) by targeting messenger (mRNA) and nascent RNA, respectively. tsRNAs also mediate transcriptional gene silencing (TGS) by recruitment of histone methyltransferases; and inhibition of long-terminal repeat (LTR) retrotranscription by competing with tRNA. tsRNAs mediate mechanisms of translational regulation by affecting ribosomal proteins and rRNA expression. In addition, they can stall protein translation by displacing the initiation factor eIF4G/eIF4A complex and inducing stress granules (SGs) formation; SGs formation are also induced via YBX1 binding. tsRNAs can displace YBX1 from mRNA transcripts and promote mRNA degradation. tsRNAs are involved in the regulation of the cell cycle and apoptosis by interfering with several signalling mechanisms. Lastly, tsRNAs are loaded in extracellular vesicles (EVs) and mediate mechanisms of regulation in recipient cells. Image was created with Biorender.com. PIWIL4 Piwi-Like RNA-mediated gene silencing 4, H3K9 histone H3 lysine 9, YBX1 Y box-binding protein, AURKA Aurora kinase A, FZD3 Frizzled Class Receptor 3, BCAR3 breast cancer anti-oestrogen resistance protein 3, JAG2 Jagged Canonical Notch Ligand 2, Twi12 tetrahymena Piwi protein.

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